E. D. Dimwamwa, A. Pala, V. Chundru, N. C. Wright, G. B. Stanley, Dynamic corticothalamic modulation of the somatosensory thalamocortical circuit during wakefulness. Nat Commun. 2024 Apr 25;15(1):3529. doi: 10.1038/s41467-024-47863-8.
PMID: 38664415. Link

D. A. Weiss, A. MF. Borsa, A. Pala, A. J. Sederberg and G. B. Stanley, A machine learning approach for real-time cortical state estimation. Journal of Neural Engineering., 1741-2552, 2024. Link

G. B. Stanley, “Control of Thalamocortical Signaling through Spike Timing and Synchrony”, in “The Cerebral Cortex and Thalamus”, edited by S. M. Sherman and W. M. Usrey, 2023. Link

L. Meyer-Baese, A. E. Morrissette, Y. Wang, B. L. Chatelier, P. Y. Borden, S. Keilholz, G. B. Stanley, D. Jaeger, Cortical networks relating to arousal are differentially coupled to neural activity and hemodynamics, submitted, J. Neurosci., doi:, 2022

A. Sederberg, A. Pala, G. B. Stanley, Latent dynamics of primary sensory cortical population activity is structured by fluctuations in the local field potential, submitted, bioRxiv preprint, doi:, 2022.

P. Y. Borden, N. C. Wright, A. E. Morrissette, D. Jaeger, B. Haider, G. B. Stanley, Thalamic bursting and the role of timing and synchrony in thalamocortical signaling in the awake mouse. Neuron. 2022 Sep 7;110(17):2836-2853.e8. doi: 10.1016/j.neuron.2022.06.008. Link

A. Pala, G. B. Stanley, Ipsilateral stimulus encoding in primary and secondary somatosensory cortex of awake mice, J. Neurosci., 42(13):2701-27152022PDF

C. Waiblinger, M. E. McDonnell, A. R. Reedy, P. Y. Borden, G. B. Stanley, Emerging experience-dependent dynamics in primary somatosensory cortex reflect behavioral adaptation, Nature Communications, 13:534, 2022. Open Access PDF

Y. J. Liew, A. Pala, C. J. Whitmire, W. A. Stoy, C. R. Forest, G. B. Stanley, Inferring thalamocortical monosynaptic connectivity in-vivo, J. Neurophysiol., 125: 2408–2431, 2021. PDF

N. C. Wright, P. Y. Borden, Y. J. Liew, M. F. Bolus, W. M. Stoy, C. R. Forest, G. B. Stanley, Rapid cortical adaptation and the role of thalamic synchrony during wakefulness, J. Neurosci., 41(25):5421-5439, 2021. PDF

C. J. Whitmire, Y. J. Liew, G. B. Stanley. Thalamic state influences timing precision in the thalamocortical circuit, J. Neurophysiol., 125(5):1833-1850, 2021. PDF

W. M. Stoy, B. Yang, A. Kight, N. C. Wright, P. Y. Borden, G. B. Stanley, C. R. Forest, Compensation of physiological motion enables high-yield whole-cell recording in vivo, J. Neurosci. Methods, Jan 15;348:109008, 2021. PDF

M. F. Bolus, A. A. Willats, C. J. Rozell, G. B. Stanley, State-space optimal feedback control of optogenetically driven neural activity, Journal of Neural Engineering, 31;18(3), 2021. PDF

A. Sederberg, A. Pala, H. Zheng, B. J. He, and G. B. Stanley.  State-aware detection of sensory stimuli in the cortex of the awake mouse, PLoS Comput Biol., 15(5):e10067162019, 2019. PDF

A. E. Morrissette, P. Chen, C. Bhamani, P. Y. Borden, C. Waiblinger, G. B. Stanley, D. Jaeger, Unilateral optogenetic inhibition and excitation of basal ganglia output show opposing effects on directional lick choices and movement initiation in mice, Neuroscience, 423: 55–65, 2019. PDF

L. Lu, X. Fu, Y. Liew, Y. Zhang, S. Zhao, Z. Xu, J. Zhao, D. Li, Q. Li, G. B. Stanley, X. Duan, Soft and MRI compatible neural electrodes from carbon nanotube fibers, Nano Letters, 19(3):1577-1586, 2019. PDF

C. Waiblinger, C. C. Wu, M.F. Bolus, P. Y. Borden, G. B. Stanley. Stimulus context and reward contingency induce behavioral adaptation in a rodent tactile detection task, J. Neurosci., 39(6):1088-1099, 2019. PDF

M. F. Bolus, A. A. Willats, C. J. Whitmire, C. J. Rozell, G. B. Stanley, Design Strategies for Dynamic Closed-Loop Optogenetic Neurocontrol in vivo, Journal of Neural Engineering 15: 026011, 2018. PDF

C. Waiblinger, C. J. Whitmire, A. J. Sederberg,  G. B. Stanley, C. Schwarz, Primary Tactile Thalamus Spiking Reflects Cognitive Signals, Journal of Neuroscience 

W. A. Stoy, I. Kolb, G. L. Holst, Y. Liew, A. Pala, B. Yang, E. S. Boyden, G. B. Stanley, C. R. Forest, Robotic navigation to subcortical neural tissue for intracellular electrophysiology in vivo, Journal of Neurophysiology 118 (2): 1141-1150, 2017. PDF

P. Y. Borden, A. D. Ortiz, C. Waiblinger, A. J. Sederberg, A. Morrissette, C. Forest, D. Jaeger, G. B. Stanley, Genetically Expressed Voltage Sensor ArcLight for Imaging Large Scale Cortical Activity in the Anesthetized and Awake Mouse, Neurophotonics 4(3), 031212, 2017. PDF

C. J. Whitmire, D. C. Millard, G. B. Stanley, Thalamic state control of cortical paired-pulse dynamics, Journal of Neurophysiology 117: 163–177, 2017. PDF

C. J. Whitmire, G. B. Stanley. Rapid sensory adaptation redux: A circuit perspective, Neuron, 2016;92:298–315. doi:10.1016/j.neuron.2016.09.046. PDF

M. J. Puntkattalee, C. J. Whitmire, A. S. Macklin, G. B. Stanley, L. H. Ting. Directional Acuity of Whole-Body Perturbations during Standing Balance, Gait & Posture 48, 77-82, 2016. PDF

C. A. Gollnick, D. C. Millard, A. Ortiz, R. V. Bellamkonda, and G. B. Stanley, Response reliability observed with voltage-sensitive dye imaging of cortical layer 2/3: the probability of activation hypothesis, J Neurophysiol 115: 2456-2469, 2016. PDF

C. J. Whitmire, C. Waiblinger, C. Schwarz, G. Stanley. Information Coding Through Adaptive Gating of Synchronized Thalamic Bursting, Cell Reports 14, 1-13, 2016. 

D. C. Millard, C. J. Whitmire, C. A. Gollnick, C. J. Rozell, G. B. Stanley, Electrical and optical activation of mesoscale neural circuits with implications for coding, J Neurosci 35(47):15702-15715, 2015. PDF

C. Waiblinger, D. Brugger, C. J. Whitmire, G. B. Stanley, C. Schwarz, Support for the slip hypothesis from whisker-related tactile Perception of rats in a noisy environment, Frontiers in Integrative Neuroscience 9:53, 2015. PDF

A. Srinivasan, J. Tipton, M. Tahilramani, A. Kharbouch, E. Gaupp, C. Song, P. Venkataraman, J. Falcone, S. P. Lacour, G. B. Stanley, A. W. English, R. V. Bellamkonda, A Regenerative Microchannel Device for Recording Multiple Single Unit Action Potentials in Awake, Ambulatory Animals, Eur J Neurosci. doi:10.1111/enj.13080 2015 PDF

J. P. Newman, M. Fong, D. C. Millard, C. J. Whitmire,  G. B. Stanley, S. M. Potter, Optogenetic feedback control of neuronal firing, eLife 4:e07192, 2015. PDF

H. J. V. Zheng, Q. Wang, & G. B. Stanley, Adaptive Shaping of Cortical Response Selectivity in the Vibrissa Pathway,  J Neurophysiol 113: 3850-3865, 2015 PDF

A. Srinivasan, M. Tahilramani, J. T. Bentley, R. K. Gore, D. C. Millard, V. J. Mukhatyar, A. Joseph, A. S. Haque, G. B. Stanley, A. W. English, R. V. Bellamkonda, Microchannel-based regenerative scaffold for chronic peripheral nerve interfacing in amputees, Biomaterials 41, 151-165, 2015 PDF

CJ Shephard, GB Stanley, The needle in the haystack, Nature neuroscience 17 (6), 752-753, 2014 PDF

D. R. Ollerenshaw, H. J. V. Zheng, Q. Wang, and G. B. Stanley, The adaptive trade-off between detection and discrimination in cortical representations and behavior, Neuron., Mar 5;81(5):1152-64, 2014. PDF

S. T. Kelly, J. Kremkow, J. Jin, Y. Wang, Q. Wang, J. M. Alonso, G. B. Stanley. The Role of Thalamic Population Synchrony In the Emergence of Cortical Feature Selectivity, PLoS Comput Biol., Jan;10(1):e1003418, 2014. PDF

B. A. Bari, D. R. Ollerenshaw, D. C. Millard, Q. Wang, G. B. Stanley. Behavioral and electrophysiological effects of cortical microstimulation parameters. PLoS One 8: e82170, 2013.

D. C. Millard, Q. Wang, C. A. Gollnick, and G. B. Stanley. System identification of the nonlinear dynamics in the thalamocortical circuit in response to patterned thalamic microstimulation in-vivo, J Neural Eng., Dec;10(6):066011, 2013. PDF

G. B. Stanley, Reading and writing the Neural Code, Nature Neurosci., 16(3):259-263, 2013. PDF

L. Karumbaiah1, T. Saxena, D. Carlson, K. Patil, R. Patkar, E. A. Gaupp, M. Betancur, G. B. Stanley, L. Carin, R. V. Bellamkonda, Relationship between intracortical electrode design and chronic recording function, Biomaterials, Nov;34(33):8061-74, 2013. PDF

T. Saxena, L. Karumbaiah, E. A. Gaupp, R. Patkar, K. Patil, M. Betancur, G. B. Stanley, R. Bellamkonda, The impact of chronic blood-brain barrier breach on intracortical electrode function, Biomaterials, 34(20), 4703-13, 2013. PDF

J Wulff, DJ Butler, GB Stanley, MJ Black, Lessons and insights from creating a synthetic optical flow benchmark, In European Conf. on Computer Vision (ECCV), Springer-Verlag,Part II, LNCS 7577, pages 168-177, October 2012. PDF

D. J. Butler, J. Wulff, G. B. Stanley and M. J. Black, A naturalistic open source movie for optical flow evaluation, In European Conf. on Computer Vision (ECCV), Springer-Verlag, Part IV, LNCS 7577, pages 611-625, October 2012. PDF

D. R. Ollerenshaw, B. A. Bari, D. C. Millard, L. E. Orr, Q. Wang, and G. B. Stanley, Detection of tactile inputs in the rat vibrissa pathway, J. Neurophysiol., 108, 479-490, 2012. PDF

Q. Wang, D. C. Millard, H. J. V. Zheng, G. B. Stanley. Voltage sensitive dye imaging reveals improved topographic activation of cortex in response to manipulation of thalamic microstimulation paramters, J. Neural Engineering, 9, 026008, 2012.  PDF

G. B. Stanley, J. Z. Jin, Y. Wang, G. Desbordes, M. J. Black, J. M. Alonso. Visual orientation and direction selectivity through thalamic synchrony, J. Neurosci., 32, 9073-9088, 2012. PDF

M. Ding, Q. Wang, E. H. Lo, and G. B. Stanley. Cortical excitation and inhibition following focal traumatic brain injury, J. Neurosci., 31(40):14085-14094, 2011. PDF

G. Desbordes, J. Z. Jin, J. M. Alonso, G. B. Stanley. Modulation of temporal precision in thalamic population responses to natural visual stimuli, Frontiers in Systems Neuroscience, 4:151, 2010. PDF

Q. Wang, R. M. Webber, and G. B. Stanley. Thalamic synchrony and the adaptive gating of information flow to cortex, Nature Neuroscience, 13(12):1534-1541, 2010. PDF, Supplement

D. A. Butts, G. Desbordes, C. Weng, J. Z. Jin, J. M. Alonso, and G. B. Stanley. The episodic nature of spike trains in the early visual pathway, J. Neurophysiol., 104:3371-3387, 2010. PDF

A. S. Boloori, R. A. Jenks, Gaelle Desbordes, and G. B. Stanley. Encoding and decoding cortical representations of tactile features in the vibrissa system, J. Neurosci., 30(30):9990-10005, 2010. PDF

R. A. Jenks, A. Vaziri, A. S. Boloori, and G. B. Stanley. Self-motion and the shaping of sensory signals, J. Neurophysiol., 103: 2195-2207, 2010. PDF

G. B. Stanley. It’s not you, it’s me. Really, Nature Neuroscience News & Views, 12(4), 374-375, 2009. PDF

G. Desbordes, C. Weng, J. Jin, N. A. Lesica, G. B. Stanley, and J. M. Alonso. Timing precision in population coding of natural scenes in the early visual system, PLOS Biology, 6(12), 2672-2682, 2008. PDF, Supplement

G. B. Stanley. Au naturel, Neuron Preview, 58:467-468, 2008. PDF

N. A. Lesica, T. Ishii, G. B. Stanley, and T. Hosoya. Estimating receptive fields from responses to natural stimuli with asymmetric intensity distributions, PLOS One, 3(8), e3060, 2008. PDF

M. Ding, E. H. Lo, and G. B. Stanley. Sustained focal cortical compression reduces electrically-induced seizure threshold, Neuroscience, 154:551-555, 2008. PDF

D. A. Butts, C. Weng, J. Z. Jin, C. I. Yeh, N. A. Lesica, J. M. Alonso, and G. B. Stanley. Temporal precision in the neural code and the time scales of natural vision, Nature, 449:92-95, 2007. PDF, Supplement

C. W. Clifford, M. A. Webster, G. B. Stanley, A. A. Stocker, A. Kohn, T. O. Sharpee, and O. Schwartz. Visual adaptation: neural, psychological and computational aspects, Vision Research, 47:3125-3131, 2007. PDF

A. Vaziri, R. A. Jenks, A. S. Boloori, and G. B. Stanley. Flexible probes for surface topology: from biology to technology, Experimental Mechanics, 47: 417-425, 2007. PDF

N. A. Lesica, J. Z. Jin, C. Weng, C. I. Yeh, D. A. Butts, G. B. Stanley, and J. M. Alonso. Adaptation to stimulus contrast and correlations during natural visual stimulation, Neuron, 55:479-491, 2007. PDF

L. M. Frank, E. N. Brown, and G. B. Stanley. Hippocampal and cortical place cell plasticity: implications for episodic memory, Hippocampus, 16:775-784, 2006. PDF

A. S. Boloori and G. B. Stanley. The dynamics of spatiotemporal response integration in vibrissa representation in the primary somatosensory cortex, J. Neurosci., 26:3767-3782, 2006. PDF

R. M. Webber and G. B. Stanley. Transient and steady-state dynamics of cortical adaptation, J. Neurophys., 95:2923-2932, 2006. PDF

N. A. Lesica, C. Weng, J. Jin, C. Yeh, J. M. Alonso, and G. B. Stanley. Dynamic encoding of natural luminance patterns by LGN bursts, PLOS Biology, 4(7), e209, 2006. PDF

N. A. Lesica and G. B. Stanley. Decoupling functional mechanisms of adaptive encoding in the visual pathway, Network: Computation in Neural Systems, 17:43-60, 2006. PDF

N. A. Lesica and G. B. Stanley. An LGN inspired detect/transmit framework for high fidelity relay of visual information with limited bandwidth, 1st International Symposium on Brain, Vision, and Artificial Intelligence, Naples, 2005. PDF

N. A. Lesica and G. B. Stanley. Functional identification of adaptive visual encoding, Neural Engineering/Signal Processing, edited by Metin Akay, IEEE/Wiley, 2005.

G. B. Stanley. Neural System Identification, in Neural Engineering, edited by Bin He, Springer, 2005. PDF

N. A. Lesica and G. B. Stanley. Improved tracking of time-varying encoding properties of visual neurons by extended recursive least-squares, IEEE Trans. Neural Sys. Rehab., 2005. PDF

N. A. Lesica and G. B. Stanley. Encoding of natural scene movies by tonic and burst spikes in the lateral geniculate nucleus, J. Neurosci., 24:10731-10740, 2004. PDF

L. M. Frank, G. B. Stanley, and E. N. Brown. Hippocampal plasticity across multiple days of exposure to novel environments, J. Neurosci., 24: 7681-7689, 2004. PDF

R. M. Webber and G. B. Stanley. Nonlinear encoding of tactile patterns in the barrel cortex, 91: 2010-2022, J. Neurophys., 2004. PDF

E. A. Goldstein, J. T. Heaton, J. B. Kobler, G. B. Stanley, and R. E. Hillman. Design and implementation of a hands-free electrolarynx device controlled by neck strap muscle electromyographic activity, IEEE Trans. Biomed. Eng., 51:325-332, 2004. PDF

N. A. Lesica, A. S. Boloori, and G. B. Stanley. Adaptive encoding in the visual pathway, Network: Comput. in Neural Systems, 14:119-135, 2003. PDF

G. B. Stanley and R. W. Webber. A point process analysis of sensory encoding, J. Comput. Neurosci., 15:321-333, 2003. PDF

G. B. Stanley. Adaptive spatiotemporal receptive field estimation in the visual pathway, Neural Computation, 14:2925-2946, 2002. PDF

B. Lau, G. B. Stanley, and Y. Dan. Computational subunits of visual cortical neurons revealed by artificial neural networks, PNAS, 99(13):8974-8979, 2002. PDF

G. B. Stanley, K. Poolla, and R. A. Siegel. Threshold modeling of autonomic control of heart rate variability, IEEE Trans. Biomed. Eng., 49(9):1147-1153, 2000. PDF

G. B. Stanley, F. F. Li, and Y. Dan. Reconstruction of natural scenes from ensemble responses in the LGN, J. Neurosci., 19(18):8036-8042, 1999. PDF

G. Stanley, D. Verotta, N. Craft, R. A. Siegel, and J. B. Schwartz. Age effects on interrelationships between lung volume and heart rate during standing, Amer. J. Physiol., 42:H2128-H2134, 1997. PDF

G. Stanley, D. Verotta, N. Craft, R. A. Siegel, and J. B. Schwartz. G. B. Stanley. Aging and/or autonomic blockade attenuation of lung-volume to heart-rate transfer functions, Amer. J. Physiol., 39:H1833-H1840, 1996.