Publications

Journal Articles

C. A. Gollnick, D. C. Millard, A. Ortiz, R. V. Bellamkonda, and G. B. Stanley, Reliability and the Neural Code: The Probability of Activation Hypothesis, submitted 2015

C. Waiblinger, D. Brugger, C. J. Whitmire, G. B. Stanley, C. Schwarz, Support for the slip hypothesis from whisker-related tactile Perception of rats in a noisy environment, submitted 2015

D. C. Millard, C. A. Gollnick, C. J. Rozell, G. B. Stanley, Electrical and optical activation of mesoscale neural circuits with implications for coding, submitted 2015

A. Srinivasan, J. Tipton, M. Tahilramani, A. Kharbouch, E. Gaupp, C. Song, P. Venkataraman, J. Falcone, S. P. Lacour, G. B. Stanley, A. W. English, R. V. Bellamkonda, A Regenerative Microchannel Device for Recording Multiple Single Unit Action Potentials in Awake, Ambulatory Animals, submitted 2015

J. P. Newman, M. Fong, D. C. Millard, C. J. Whitmire,  G. B. Stanley, S. M. Potter, Optogenetic feedback control of neuronal firing, eLife, 2015. PDF

H. J. V. Zheng, Q. Wang, and G. B. Stanley, Adaptive Shaping of Cortical Response Selectivity in the Vibrissa Pathway,  J Neurophysiol, 2015

A. Srinivasan, M. Tahilramani, J. T. Bentley, R. K. Gore, D. C. Millard, V. J. Mukhatyar, A. Joseph, A. S. Haque, G. B. Stanley, A. W. English, R. V. Bellamkonda, Microchannel-based regenerative scaffold for chronic peripheral nerve interfacing in amputees, Biomaterials 41, 151-165, 2015 PDF

C. J. Shephard, G. B. Stanley, The needle in the haystack, Nature neuroscience 17 (6), 752-753, 2014 PDF

D. R. Ollerenshaw, H. J. V. Zheng, Q. Wang, and G. B. Stanley, The adaptive trade-off between detection and discrimination in cortical representations and behavior, Neuron., Mar 5;81(5):1152-64, 2014.PDF

D. C. Millard, Q. Wang, C. A. Gollnick, and G. B. Stanley. System identification of the nonlinear dynamics in the thalamocortical circuit in response to patterned thalamic microstimulation in-vivo, J Neural Eng., Dec;10(6):066011, 2013.PDF

S. T. Kelly, J. Kremkow, J. Jin, Y. Wang, Q. Wang, J. M. Alonso, G. B. Stanley. The Role of Thalamic Population Synchrony In the Emergence of Cortical Feature Selectivity, PLoS Comput Biol., Jan;10(1):e1003418, 2014.PDF

G. B. Stanley, Reading and writing the Neural Code, Nature Neurosci., 16(3):259-263, 2013. PDF

L. Karumbaiah, T. Saxena, D. Carlson, K. Patil, R. Patkar, E. A. Gaupp, M. Betancur, G. B. Stanley, L. Carin, R. V. Bellamkonda, Relationship between intracortical electrode design and chronic recording function, Biomaterials, Nov;34(33):8061-74, 2013.PDF

T. Saxena, L. Karumbaiah, E. A. Gaupp, R. Patkar, K. Patil, M. Betancur, G. B. Stanley, R. Bellamkonda, The impact of chronic blood-brain barrier breach on intracortical electrode function, Biomaterials, 34(20), 4703-13, 2013.PDF

J. Wulff, D. J. Butler, G. B. Stanley, M. J. Black, Lessons and insights from creating a synthetic optical flow benchmark, In European Conf. on Computer Vision (ECCV), Springer-Verlag,Part II, LNCS 7577, pages 168-177, October 2012.PDF

D. J. Butler, J. Wulff, G. B. Stanley and M. J. Black, A naturalistic open source movie for optical flow evaluation, In European Conf. on Computer Vision (ECCV), Springer-Verlag, Part IV, LNCS 7577, pages 611-625, October 2012. PDF

D. R. Ollerenshaw, B. A. Bari, D. C. Millard, L. E. Orr, Q. Wang, and G. B. Stanley, Detection of tactile inputs in the rat vibrissa pathway, J. Neurophysiol., 108, 479-490, 2012. PDF

Q. Wang, D. C. Millard, H. J. V. Zheng, G. B. Stanley. Voltage sensitive dye imaging reveals improved topographic activation of cortex in response to manipulation of thalamic microstimulation paramters, J. Neural Engineering, 9, 026008, 2012. PDF

G. B. Stanley, J. Z. Jin, Y. Wang, G. Desbordes, M. J. Black, J. M. Alonso. Visual orientation and direction selectivity through thalamic synchrony, J. Neurosci., 32, 9073-9088, 2012. PDF

M. Ding, Q. Wang, E. H. Lo, and G. B. Stanley. Cortical excitation and inhibition following focal traumatic brain injury, J. Neurosci., 31(40):14085-14094, 2011. PDF

G. Desbordes, J. Z. Jin, J. M. Alonso, G. B. Stanley. Modulation of temporal precision in thalamic population responses to natural visual stimuli, Frontiers in Systems Neuroscience, 4:151, 2010. PDF

Q. Wang, R. M. Webber, and G. B. Stanley. Thalamic synchrony and the adaptive gating of information flow to cortex, Nature Neuroscience, 13(12):1534-1541, 2010. PDF, Supplement

D. A. Butts, G. Desbordes, C. Weng, J. Z. Jin, J. M. Alonso, and G. B. Stanley. The episodic nature of spike trains in the early visual pathway, J. Neurophysiol., 104:3371-3387, 2010. PDF

A. S. Boloori, R. A. Jenks, Gaelle Desbordes, and G. B. Stanley. Encoding and decoding cortical representations of tactile features in the vibrissa system, J. Neurosci., 30(30):9990-10005, 2010. PDF

R. A. Jenks, A. Vaziri, A. S. Boloori, and G. B. Stanley. Self-motion and the shaping of sensory signals, J. Neurophysiol., 103: 2195-2207, 2010. PDF

G. B. Stanley. It’s not you, it’s me. Really, Nature Neuroscience News & Views, 12(4), 374-375, 2009. PDF

G. Desbordes, C. Weng, J. Jin, N. A. Lesica, G. B. Stanley, and J. M. Alonso. Timing precision in population coding of natural scenes in the early visual system, PLOS Biology, 6(12), 2672-2682, 2008. PDF, Supplement

G. B. Stanley. Au naturel, Neuron Preview, 58:467-468, 2008. PDF

N. A. Lesica, T. Ishii, G. B. Stanley, and T. Hosoya. Estimating receptive fields from responses to natural stimuli with asymmetric intensity distributions, PLOS One, 3(8), e3060, 2008. PDF

M. Ding, E. H. Lo, and G. B. Stanley. Sustained focal cortical compression reduces electrically-induced seizure threshold, Neuroscience, 154:551-555, 2008. PDF

D. A. Butts, C. Weng, J. Z. Jin, C. I. Yeh, N. A. Lesica, J. M. Alonso, and G. B. Stanley. Temporal precision in the neural code and the time scales of natural vision, Nature, 449:92-95, 2007. PDF, Supplement

C. W. Clifford, M. A. Webster, G. B. Stanley, A. A. Stocker, A. Kohn, T. O. Sharpee, and O. Schwartz. Visual adaptation: neural, psychological and computational aspects, Vision Research, 47:3125-3131, 2007. PDF

A. Vaziri, R. A. Jenks, A. S. Boloori, and G. B. Stanley. Flexible probes for surface topology: from biology to technology, Experimental Mechanics, 47: 417-425, 2007. PDF

N. A. Lesica, J. Z. Jin, C. Weng, C. I. Yeh, D. A. Butts, G. B. Stanley, and J. M. Alonso. Adaptation to stimulus contrast and correlations during natural visual stimulation, Neuron, 55:479-491, 2007. PDF

L. M. Frank, E. N. Brown, and G. B. Stanley. Hippocampal and cortical place cell plasticity: implications for episodic memory, Hippocampus, 16:775-784, 2006. PDF

A. S. Boloori and G. B. Stanley. The dynamics of spatiotemporal response integration in vibrissa representation in the primary somatosensory cortex, J. Neurosci., 26:3767-3782, 2006. PDF

R. M. Webber and G. B. Stanley. Transient and steady-state dynamics of cortical adaptation, J. Neurophys., 95:2923-2932, 2006. PDF

N. A. Lesica, C. Weng, J. Jin, C. Yeh, J. M. Alonso, and G. B. Stanley. Dynamic encoding of natural luminance patterns by LGN bursts, PLOS Biology, 4(7), e209, 2006. PDF

N. A. Lesica and G. B. Stanley. Decoupling functional mechanisms of adaptive encoding in the visual pathway, Network: Computation in Neural Systems, 17:43-60, 2006. PDF

N. A. Lesica and G. B. Stanley. An LGN inspired detect/transmit framework for high fidelity relay of visual information with limited bandwidth, 1st International Symposium on Brain, Vision, and Artificial Intelligence, Naples, 2005. PDF

N. A. Lesica and G. B. Stanley. Functional identification of adaptive visual encoding, Neural Engineering/Signal Processing, edited by Metin Akay, IEEE/Wiley, 2005.

G. B. Stanley. Neural System Identification, in Neural Engineering, edited by Bin He, Springer, 2005. PDF

N. A. Lesica and G. B. Stanley. Improved tracking of time-varying encoding properties of visual neurons by extended recursive least-squares, IEEE Trans. Neural Sys. Rehab., 2005. PDF

N. A. Lesica and G. B. Stanley. Encoding of natural scene movies by tonic and burst spikes in the lateral geniculate nucleus, J. Neurosci., 24:10731-10740, 2004. PDF

L. M. Frank, G. B. Stanley, and E. N. Brown. Hippocampal plasticity across multiple days of exposure to novel environments, J. Neurosci., 24: 7681-7689, 2004. PDF

R. M. Webber and G. B. Stanley. Nonlinear encoding of tactile patterns in the barrel cortex, 91: 2010-2022, J. Neurophys., 2004. PDF

E. A. Goldstein, J. T. Heaton, J. B. Kobler, G. B. Stanley, and R. E. Hillman. Design and implementation of a hands-free electrolarynx device controlled by neck strap muscle electromyographic activity, IEEE Trans. Biomed. Eng., 51:325-332, 2004. PDF

N. A. Lesica, A. S. Boloori, and G. B. Stanley. Adaptive encoding in the visual pathway, Network: Comput. in Neural Systems, 14:119-135, 2003. PDF

G. B. Stanley and R. W. Webber. A point process analysis of sensory encoding, J. Comput. Neurosci., 15:321-333, 2003.PDF

G. B. Stanley. Adaptive spatiotemporal receptive field estimation in the visual pathway, Neural Computation, 14:2925-2946, 2002. PDF

B. Lau, G. B. Stanley, and Y. Dan. Computational subunits of visual cortical neurons revealed by artificial neural networks, PNAS, 99(13):8974-8979, 2002. PDF

G. B. Stanley, K. Poolla, and R. A. Siegel. Threshold modeling of autonomic control of heart rate variability, IEEE Trans. Biomed. Eng., 49(9):1147-1153, 2000. PDF

G. B. Stanley, F. F. Li, and Y. Dan. Reconstruction of natural scenes from ensemble responses in the LGN, J. Neurosci., 19(18):8036-8042, 1999. PDF

G. Stanley, D. Verotta, N. Craft, R. A. Siegel, and J. B. Schwartz. Age effects on interrelationships between lung volume and heart rate during standing, Amer. J. Physiol., 42:H2128-H2134, 1997. PDF

G. Stanley, D. Verotta, N. Craft, R. A. Siegel, and J. B. Schwartz. Age and autonomic effects on interrelationships between lung volume and heart rate, Amer. J. Physiol., 39:H1833-H1840, 1996.

 

Conference Abstracts & Proceedings

R. A. Jenks, A. Vaziri, A. S. Boloori, and G. B. Stanley. Representation of tactile features by the vibrissa system in awake behaving rats, SFN, Atlanta, 2006. PDF

A. S. Boloori, D. A. Butts, R. A. Jenks, and G. B. Stanley. Coding of tactile features by layer 4 of the rat S1 cortex, SFN, Atlanta, 2006. PDF

R. M. Webber and G. B. Stanley. Adaptation dynamically alters cortical sensitivity to thalamic input precision, SFN, Atlanta, 2006. PDF

D. A. Butts, C. Weng, J. Z. Jin, C. I. Yeh, N. A. Lesica, J. A. Alonso, and G. B. Stanley. The role of temporal precision in the neural code and its relationship to the time scales of natural stimuli, SFN, Atlanta, 2006. PDF

A. S. Boloori and G. B. Stanley. How does joint activity across a population of neurons influence the precision of coding in the cortex?, AREADNE, Santorini, Greece, 2006. PDF

D. A. Butts, C. Weng, J. Z. Jin, C. I. Yeh, N. A. Lesica, J. M. Alonso, G. B. Stanley. Contrast adaptation and the role of temporal precision in the visual code, COSYNE, Salt Lake City Utah, 2006.

R. M. Webber and G. B. Stanley. Nonlinear cortical responses can be generated by precise timing of thalamic spikes in the rat vibrissa system, COSYNE, Salt Lake City Utah, 2006. PDF

D. A. Butts, C. Weng, J. Z. Jin, C. I. Yeh, N. A. Lesica, J. A. Alonso, and G. B. Stanley. Changes in functional properties of LGN neurons with contrast and their significance in information transmission, SFN, Washington DC, 2005. PDF

N. A. Lesica, J. Z. Jin, C. Weng, C. I. Yeh, D. A. Butts, G. B. Stanley, and J. A. Alonso. The effects of contrast adaptation during natural stimulation, SFN, Washington DC, 2005. PDF

M. C. Ding, E. Tejima, E. H. Lo, and G. B. Stanley, Electrophysiology of the rat barrel cortex following traumatic brain injury, SFN, Washington DC, 2005. PDF

R. A. Jenks and G. B. Stanley. Stimulus-driven response dynamics of the whisker/barrel-cortex system in awake behaving rats, SFN, Washington DC, 2005. PDF

A. Boloori and G. B. Stanley. Spatiotemporal interactions influence precision of coding by single- and multiple neurons in the rat barrel cortex, SFN, Washington DC, 2005. PDF

J. R. Chen, L. M. Frank, E. N. Brown, G. B. Stanley. Theta waves in the hippcampus and the deep layer of the entorhinal cortex become more phase-locked with increasing locomotive speed, SFN, Washington DC, 2005. PDF

G. B. Stanley, A. Boloori, R. A. Jenks, R. M. Webber. A nonlinear dynamical model of excitatory-inhibitory interactions in the vibrissa system, SFN, Washington DC, 2005. PDF

R. M. Webber and G. B. Stanley. Thalamocortical transformations of temporal stimulation patterns in the rat vibrissa system, SFN, Washington DC, 2005. PDF

N. A. Lesica and G. B. Stanley. Signal detection of salient visual features by the early visual pathway, Annual Meeting of the BMES, Baltimore, 2005.

R. M. Webber and G. B. Stanley. Thalamocortical transformations of tactile patterns in the rat vibrissa system, Annual Meeting of the BMES, Baltimore, 2005.

J. R. Chen, L. M. Frank, E. N. Brown, and G. B. Stanley. Theta in the entorhinal-hippocampus axis becomes more phase-locked as locomotive speed increases, Annual Meeting of the BMES, Baltimore, 2005.

L. M. Frank, G. B. Stanley, and E. N. Brown. Hippocampal Plasticity across Multiple Days of Exposure to Novel Environments, Annual Meeting of the BMES, Baltimore, 2005.

N. A. Lesica and G. B. Stanley. Signal detection of salient visual features by the early visual pathway, Annual IEEE EMBS Meeting, Shanghai, 2005. PDF

N. A. Lesica and G. B. Stanley. An LGN inspired detect/transmit framework for high fidelity relay of visual informatoin with limited bandwidth, 1st International Symposium on Brain, Vision, and Artificial Intelligence, Naples, 2005. PDF

R. M. Webber and G. B. Stanley. Post-excitatory suppression dictates the dynamics of adaptation in barrel cortex, COSYNE, Salt Lake City, 2005. PDF

D. A. Butts and G. B. Stanley. The important aspects of visual encoding: relating receptive fields to mutual information rates in visual neurons, COSYNE, Salt Lake City, 2005. PDF

N. A. Lesica and G. B. Stanley. LGN bursts enhance detection of specific stimulus features, COSYNE, Salt Lake City, 2005.PDF

R. M. Webber and G. B. Stanley. Transient adaptation properties in rat barrel cortex are affected by the initial direction of vibrissa deflection, SFN, San Diego, 2004. HTML

N. A. Lesica and G. B. Stanley. The role of LGN bursts in natural vision, SFN, San Diego, 2004. HTML

A. S. Boloori and G. B. Stanley. Nonlinear center-surround interactions in the barrel cortex, SFN, San Diego, 2004. HTML

G. B. Stanley, R. M. Webber, and A. S. Boloori. Nonlinear spatiotemporal encoding in the rat vibrissa system, Barrel Cortex Meeting, EPFL, Lausanne, Switzerland, 2004. HTML

N. A. Lesica and G. B. Stanley. The role of LGN bursts in natural vision, COSYNE, Cold Spring Harbor Laboratories, 2004.HTML

A. S. Boloori and G. B. Stanley. Nonlinear center-surround interactions in the barrel cortex, COSYNE, Cold Spring Harbor Laboratories, 2004. POSTSCRIPT

D. A. Butts, A. E. Desjardins, and G. B. Stanley. Quick and accurate information calculations based on linear characterizations of sensory neurons, SFN, New Orleans, 2003. HTML

N. A. Lesica and G. B. Stanley. Adaptive interactions in the visual pathway, SFN, New Orleans, 2003. HTML

R. A. Jenks, T. Warren, L. M. Frank, and G. B. Stanley. Texture detection and discrimination by the whisker/barrel-cortex system in awake behaving rats, SFN, New Orleans, 2003. HTML

R. M. Webber and G. B. Stanley. Prediction of responses to periodic and aperiodic stimuli in the rat barrel cortex, SFN, New Orleans, 2003. HTML

D. A. Butts, A. E. Desjardins, and G. B. Stanley. Model based information calculations for neuronal encoding, Computational Neuroscience (CNS), Alicante, Spain, 2003.

E. A. Goldstein, J. T. Heaton, J. B. Kobler, G. B. Stanley, and R. E. Hillman. Design and implementation of a hands-free electrolarynx device controlled by neck strap muscle electromyographic activity, 1st Annual IEEE-EMBS Conference on Neural Engineering, Capri Island, 2002.

G. B. Stanley and R. M. Webber. A point process analysis of sensory processing, 1st Annual IEEE-EMBS Conference on Neural Engineering, Capri Island, 2002.

R. M. Webber and G. B. Stanley. Temporal dynamics in somatosensory cortex, 32nd annual meeting of the Society for Neuroscience, Orlando, 2002.

N. A. Lesica and G. B. Stanley. Estimation of adaptive encoding in the visual pathway, IEEE-EMBS, Houston, 2002.

A. S. Boloori and G. B. Stanley. Stimulus reconstruction from nonlinear neuronal encoding, CNS, Chicago, 2002.

G. B. Stanley. Adaptive estimation of time-varying dynamics in the visual pathway, NIPS Workshop on Information and Statistical Structure in Spike Trains, 2001.

G. B. Stanley and A. SeyedBoloori. Decoding in neural systems: stimulus reconstruction from nonlinear encoding, Engineering in Medicine and Biology Society, Istanbul, 2001.

G. B. Stanley. Wiener kernel estimation for neural systems with natural inputs, Proceedings of the 10th Annual Computational Neuroscience Meeting, Monterey, 2001.

A. SeyedBoloori and G. B. Stanley. Stimulus reconstruction as the inverse of the neural encoding process: a Wiener series approach, 5th International Conference on Cognitive and Neural Systems, Boston, 2001.

N. Lesica and G. B. Stanley. A computational analysis of Wiener kernel estimation in neural systems, 5th International Conference on Cognitive and Neural Systems, Boston, 2001.

G. B. Stanley, Adaptive Estimation of Time-varying Dynamics in the Visual Pathway, NIPS Workshop on Information and Statistical Structure in Spike Trains, 2001.

G. B. Stanley. Time-varying properties of neurons in visual cortex: estimation and prediction, 30th annual meeting of the Society for Neuroscience, New Orleans, 2000.

G. B. Stanley, Algorithms for real-time prediction in neural systems, Engineering in Medicine and Biology Society, Chicago, 2000.

G. B. Stanley. Recursive stimulus reconstruction algorithms for real-time implementation in neural ensembles, Annual Computational Neuroscience Meeting, Brugge, Belgium, 2000.

G. B. Stanley, F.F. Li, and Y. Dan. Predicting Neuronal Responses in the Striate Cortex with Neural Networks, 29th annual meeting of the Society for Neuroscience, Miami, 1999.

G. Stanley, F.F. Li, and Y. Dan. Reconstruction of natural scenes from ensemble responses in the LGN, 28th annual meeting of the Society for Neuroscience, Los Angeles, 1998.

G. Stanley, K. Poolla, and R.A. Siegel. Threshold modeling of autonomic control of heart rate variability, Biomed. Eng. Society, San Diego, 1997.

G. Stanley and R. Siegel. Threshold modeling of respiratory sinus arrhythmia, American Association of Pharmaceutical Scientists Western Regional, San Francisco, 1996.

G. Stanley, D. Verotta, N. Craft, R. Siegel, and J. Schwartz. Aging and/or autonomic blockade attenuation of lung
volume to heart rate transfer functions, Exp. Biology, Atlanta, 1996.

 

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